seurat package (10X Genomics)
86
Structured Review
10X Genomics
seurat package
Seurat Package, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/seurat+package/seurat/pmc13143995-91-3-11
Average 86 stars, based on 1 article reviews
Seurat Package, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/seurat+package/seurat/pmc13143995-91-3-11
Average 86 stars, based on 1 article reviews
seurat package - by Bioz Stars,
2026-09
86/100 stars
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Related Articles
Sequencing:Article Title: Dissecting the role of CAR signaling architectures on T cell activation and persistence using pooled screens and single-cell sequencing Article Snippet: The final scCARseq library was then purified using a 1X-0.6X double-sided SPRIselect bead DNA cleanup (Beckman Coulter) and sequenced with the Illumina platform using the same cycle scheme as the scRNAseq and scCITEseq libraries. scCARseq data analysis was conducted using the Biostrings package in R. Only cells with at least two different unique molecular identifiers (UMIs) defining the same CAR annotation were accepted. .. The raw sequencing data were aligned to the GRCh38 human reference genome using Cell Ranger (10X Genomics, version 6.0.0) and imported into R (version 4.2.3) to perform downstream analysis using the other:Article Title: scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data Article Snippet: The package also supports the data preprocessing pipelines by Single Cell RNA-Seq:Article Title: RNA Sequencing of Whole Blood Defines the Signature of High Intensity Exercise at Altitude in Elite Speed Skaters Article Snippet: .. Publicly available single cell RNA-seq datasets (GSE149938 and 10k PBMC cells from 10X Genomics) were downloaded locally and processed using the Biomarker Discovery:Article Title: Morphine treatment restricts response to immunotherapy in oral squamous cell carcinoma. Article Snippet: .. Clinical data were obtained via chart review, including baseline characteristics such as age at diagnosis, sex, race, human papilloma virus status for oropharyngeal tumors, tumor pathological stage. scRNA- Seq data from TILs of patients with HNSCC were sourced from GSE139324,29 comprizing 10 opioid- naive and 16 opioid- exposed patients’ scRNA- Seq data which were processed using the 10X Genomics Cell Ranger pipeline.29 Seurat objects were created from available raw gene expression matrices for each patient, normalized, and integrated using R with the Virus:Article Title: Morphine treatment restricts response to immunotherapy in oral squamous cell carcinoma. Article Snippet: .. Clinical data were obtained via chart review, including baseline characteristics such as age at diagnosis, sex, race, human papilloma virus status for oropharyngeal tumors, tumor pathological stage. scRNA- Seq data from TILs of patients with HNSCC were sourced from GSE139324,29 comprizing 10 opioid- naive and 16 opioid- exposed patients’ scRNA- Seq data which were processed using the 10X Genomics Cell Ranger pipeline.29 Seurat objects were created from available raw gene expression matrices for each patient, normalized, and integrated using R with the Gene Expression:Article Title: Morphine treatment restricts response to immunotherapy in oral squamous cell carcinoma. Article Snippet: .. Clinical data were obtained via chart review, including baseline characteristics such as age at diagnosis, sex, race, human papilloma virus status for oropharyngeal tumors, tumor pathological stage. scRNA- Seq data from TILs of patients with HNSCC were sourced from GSE139324,29 comprizing 10 opioid- naive and 16 opioid- exposed patients’ scRNA- Seq data which were processed using the 10X Genomics Cell Ranger pipeline.29 Seurat objects were created from available raw gene expression matrices for each patient, normalized, and integrated using R with the Software:Article Title: Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome Article Snippet: .. Data analysis 10X Genomics Cell Ranger pipeline (v2.1.1), Generated:Article Title: scTrimClust: A Fast Approach to Robust scRNA-seq Analysis Using Trimmed Cell Clusters Article Snippet: .. The first one, names PBMC 3k, was generated from peripheral blood mononuclear cells, is featured in the Seurat guided tutorial and is accessible through the |
